Software and Data
ABC-SysBio
http://abc-sysbio.sourceforge.net/
This package employs approximate Bayesian methods for inference in systems biology models.
Features include:
- Inference for ordinary differential equations (ODE), stochastic differential equations (SDE) and Markov jump processes
- Parameter estimation / calibration
- Model selection
- SBML support
- CUDA GPU device support
GPR Bootstrap
Matlab files for performing Gaussian process regression bootstrapping (including demo data).
This software is dependent upon the gpml suite of programs available from http://www.gaussianprocess.org/gpml/code/
SNPSTR
A database containing compound microsatellite-SNP markers in human, dog, mouse, rat and chicken.
NetZ
The netZ R-package tests a range of popular models for the degree distribution of (undirected) complex networks.
To install netZ, copy the tgz file into a suitable directory and call it netZ.tgz. Then run
'R CMD INSTALL netZ.tgz'
and the package will be installed. You can call it from within R via the 'library("netZ")' command. For details on the R statistical environment please consult the R-project webpages. You will also need the 'gsl' package which can be downloaded from CRAN.
